Description
This panel contains genes associated with inborn errors in the metabolism of amino acids. It has been aligned with the classifications by the ClinGen Aminoacidopathy GCEP.

This panel is a component of the Metabolic Disorders Superpanel.

10 reviewers

  • Samantha Ayres (Victorian Clinical Genetics Services)

  • Belinda Chong (Victorian Clinical Genetics Services)

  • Teresa Zhao (Victorian Clinical Genetics Services)

  • Krithika Murali (Victorian Clinical Genetics Services)

  • Elena Savva (Victorian Clinical Genetics Services)

  • Suliman Khan (Victorian Clinical Genetics Services)

  • Bryony Thompson (Royal Melbourne Hospital)

  • Melanie Marty (Victorian Clinical Genetics Services)

  • Sangavi Sivagnanasundram (Melbourne Health)

  • Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

134 Entities

134 reviewed, 111 green

List Entity Reviews Mode of inheritance Details
134 Entitiess
Green Green List (high evidence)
AASS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperlysinemia MONDO:0009388
Tags
Green Green List (high evidence)
ACAD8
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • isobutyryl-CoA dehydrogenase deficiency MONDO:0012648
Tags
Green Green List (high evidence)
ACADSB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • 2-methylbutyryl-CoA dehydrogenase deficiency MONDO:0012392
Tags
Green Green List (high evidence)
ACAT1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • beta-ketothiolase deficiency MONDO:0008760
Tags
  • treatable
Green Green List (high evidence)
ACSF3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • combined malonic and methylmalonic acidemia MONDO:0013661
Tags
Green Green List (high evidence)
ACY1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • aminoacylase 1 deficiency MONDO:0012368
Tags
Green Green List (high evidence)
ADK
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • adenosine kinase deficiency MONDO:0100255
Tags
Green Green List (high evidence)
AGA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Canavan disease MONDO:0010079
Tags
Green Green List (high evidence)
AHCY
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase MONDO:0013404
Tags
Green Green List (high evidence)
ALDH18A1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • P5CS deficiency MONDO:0100126
Tags
Green Green List (high evidence)
ALDH4A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperprolinemia type 2 MONDO:0009401
Tags
Green Green List (high evidence)
ALDH6A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • methylmalonate semialdehyde dehydrogenase deficiency MONDO:0013579
Tags
Green Green List (high evidence)
ALDH7A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • pyridoxine-dependent epilepsy MONDO:0009945
Tags
Green Green List (high evidence)
AMT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glycine encephalopathy MONDO:0011612
Tags
Green Green List (high evidence)
ARG1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperargininemia MONDO:0008814
Tags
Green Green List (high evidence)
ASL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • argininosuccinic aciduria MONDO:0008815
Tags
Green Green List (high evidence)
ASNS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome MONDO:0014258
Tags
Green Green List (high evidence)
ASS1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • citrullinemia type I MONDO:0008988
Tags
Green Green List (high evidence)
AUH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria type 1 MONDO:0009610
Tags
Green Green List (high evidence)
BCAT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • hypervalinemia and hyperleucine-isoleucinemia MONDO:0100058
Tags
Green Green List (high evidence)
BCKDHA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • maple syrup urine disease type 1A MONDO:0023691
Tags
  • treatable
Green Green List (high evidence)
BCKDHB
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • maple syrup urine disease type 1B MONDO:0023692
Tags
  • treatable
Green Green List (high evidence)
BCKDK
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • branched-chain keto acid dehydrogenase kinase deficiency MONDO:0013970
Tags
  • treatable
Green Green List (high evidence)
CA5A
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency MONDO:0014332
Tags
Green Green List (high evidence)
CBS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • classic homocystinuria MONDO:0009352
Tags
Green Green List (high evidence)
CLPB
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria with cataracts, neurologic involvement and neutropenia MONDO:0014561
  • 3-methylglutaconic aciduria, type VIIA, autosomal dominant, MIM# 619835
Tags
Green Green List (high evidence)
CPS1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • carbamoyl phosphate synthetase I deficiency disease MONDO:0009376
Tags
Green Green List (high evidence)
CTH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • cystathioninuria MONDO:0009058
Tags
Green Green List (high evidence)
DBT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • maple syrup urine disease MONDO:0009563
Tags
  • treatable
Green Green List (high evidence)
DHTKD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • 2-aminoadipic 2-oxoadipic aciduria MONDO:0008774
Tags
Green Green List (high evidence)
DLD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • pyruvate dehydrogenase E3 deficiency MONDO:0009529
Tags
Green Green List (high evidence)
DNAJC12
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperphenylalaninemia due to DNAJC12 deficiency MONDO:0044304
Tags
Green Green List (high evidence)
DNAJC19
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • 3-methylglutaconic aciduria type 5 MONDO:0012435
Tags
Green Green List (high evidence)
FAH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosinemia type I MONDO:0010161
Tags
Green Green List (high evidence)
FMO3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • trimethylaminuria MONDO:0011182
Tags
Green Green List (high evidence)
GAD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Developmental and epileptic encephalopathy 89, MIM# 619124
Tags
Green Green List (high evidence)
GAMT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • guanidinoacetate methyltransferase deficiency MONDO:0012999
Tags
Green Green List (high evidence)
GATM
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • AGAT deficiency MONDO:0012996
Tags
Green Green List (high evidence)
GCDH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glutaryl-CoA dehydrogenase deficiency MONDO:0009281
Tags
Green Green List (high evidence)
GCH1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • GTP cyclohydrolase I deficiency MONDO:0100184
Tags
Green Green List (high evidence)
GCLC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Gamma-glutamylcysteine synthetase deficiency MONDO:0009259
  • Disorders of glutathione metabolism
Tags
Green Green List (high evidence)
GCSH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glycine encephalopathy MONDO:0011612
Tags
Green Green List (high evidence)
GLDC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glycine encephalopathy MONDO:0011612
Tags
Green Green List (high evidence)
GLS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glutaminase deficiency MONDO:0600001
Tags
Green Green List (high evidence)
GLUD1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperinsulinism-hyperammonemia syndrome MONDO:0011717
Tags
Green Green List (high evidence)
GLUL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • congenital brain dysgenesis due to glutamine synthetase deficiency MONDO:0012393
Tags
Green Green List (high evidence)
GPX4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Spondylometaphyseal dysplasia, Sedaghatian type MONDO:0009593
  • Disorders of glutathione metabolism
Tags
Green Green List (high evidence)
GRHPR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • primary hyperoxaluria type 2 MONDO:0009824
  • Disorders of glyoxylate and oxalate metabolism
Tags
Green Green List (high evidence)
GRM6
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • GRM6-related retinopathy MONDO:0800397
Tags
Green Green List (high evidence)
GSS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • inherited glutathione synthetase deficiency MONDO:0017909
Tags
Green Green List (high evidence)
HAAO
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • vertebral, cardiac, renal, and limb defects syndrome 1 MONDO:0060554
Tags
Green Green List (high evidence)
HGD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • alkaptonuria MONDO:0008753
Tags
Green Green List (high evidence)
HIBCH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-hydroxyisobutyryl-CoA hydrolase deficiency MONDO:0009603
Tags
Green Green List (high evidence)
HMGCL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-hydroxy-3-methylglutaric aciduria MONDO:0009520
Tags
  • treatable
Green Green List (high evidence)
HOGA1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • primary hyperoxaluria type 3 MONDO:0013327
  • Disorders of ornithine, proline and hydroxyproline metabolism
Tags
Green Green List (high evidence)
HPD
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosinemia type III MONDO:0010162
  • hawkinsinuria MONDO:0007700
Tags
Green Green List (high evidence)
IVD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • isovaleric acidemia MONDO:0009475
Tags
  • treatable
Green Green List (high evidence)
KYNU
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • vertebral, cardiac, renal, and limb defects syndrome 2 MONDO:0060555
Tags
Green Green List (high evidence)
LMBRD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblF MONDO:0010183
Tags
Green Green List (high evidence)
MAT1A
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methionine adenosyltransferase deficiency MONDO:0009607
Tags
Green Green List (high evidence)
MCCC1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylcrotonyl-CoA carboxylase deficiency MONDO:0018950
Tags
Green Green List (high evidence)
MCCC2
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylcrotonyl-CoA carboxylase deficiency MONDO:0018950
Tags
Green Green List (high evidence)
MCEE
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency MONDO:0009615
Tags
Green Green List (high evidence)
MMAA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • methylmalonic aciduria, cblA type MONDO:0009613
Tags
  • treatable
Green Green List (high evidence)
MMAB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • methylmalonic aciduria, cblB type MONDO:0009614
Tags
  • treatable
Green Green List (high evidence)
MMACHC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblC MONDO:0010184
Tags
Green Green List (high evidence)
MMADHC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblD MONDO:0010185
Tags
  • treatable
Green Green List (high evidence)
MTHFR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • homocystinuria due to methylene tetrahydrofolate reductase deficiency MONDO:0009353
Tags
Green Green List (high evidence)
MTR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylcobalamin deficiency type cblG MONDO:0009609
Tags
Green Green List (high evidence)
MTRR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylcobalamin deficiency type cblE MONDO:0009354
Tags
Green Green List (high evidence)
MUT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency MONDO:0009612
Tags
Green Green List (high evidence)
NAGS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperammonemia due to N-acetylglutamate synthase deficiency MONDO:0009377
Tags
Green Green List (high evidence)
NFE2L2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Immunodeficiency, developmental delay, and hypohomocysteinemia MONDO:0060591
  • Disorders of glutathione metabolism
Tags
Green Green List (high evidence)
OAT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • ornithine aminotransferase deficiency MONDO:0009796
Tags
Green Green List (high evidence)
OPA3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria type 3 MONDO:0009787
Tags
Green Green List (high evidence)
OTC
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Other
Phenotypes
  • ornithine carbamoyltransferase deficiency MONDO:0010703
Tags
Green Green List (high evidence)
PAH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • phenylketonuria MONDO:0009861
Tags
Green Green List (high evidence)
PCBD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • pterin-4 alpha-carbinolamine dehydratase 1 deficiency MONDO:0009908
Tags
Green Green List (high evidence)
PCCA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • propionic acidemia MONDO:0011628
Tags
  • treatable
Green Green List (high evidence)
PCCB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • propionic acidemia MONDO:0011628
Tags
  • treatable
Green Green List (high evidence)
PEPD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Prolidase deficiency MONDO:0008221
Tags
Green Green List (high evidence)
PHGDH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurometabolic disorder due to serine deficiency MONDO:0018162
Tags
Green Green List (high evidence)
PRODH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperprolinemia type 1 MONDO:0009400
Tags
Green Green List (high evidence)
PSAT1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurometabolic disorder due to serine deficiency MONDO:0018162
Tags
Green Green List (high evidence)
PSPH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurometabolic disorder due to serine deficiency MONDO:0018162
Tags
Green Green List (high evidence)
PTS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • BH4-deficient hyperphenylalaninemia A MONDO:0009863
Tags
Green Green List (high evidence)
PYCR1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • autosomal recessive cutis laxa type 2B MONDO:0013051
Tags
Green Green List (high evidence)
PYCR2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Hypomyelinating leukodystrophy 10 MONDO:0014632
  • Disorders of ornithine, proline and hydroxyproline metabolism
Tags
Green Green List (high evidence)
QDPR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • dihydropteridine reductase deficiency MONDO:0009862
Tags
Green Green List (high evidence)
SELENBP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • extraoral halitosis due to methanethiol oxidase deficiency MONDO:0029144
Tags
Green Green List (high evidence)
SERAC1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome MONDO:0013875
Tags
Green Green List (high evidence)
SHMT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities MONDO:0030866
Tags
Green Green List (high evidence)
SLC1A2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • developmental and epileptic encephalopathy, 41 MONDO:0014916
Tags
Green Green List (high evidence)
SLC1A3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • episodic ataxia type 6 MONDO:0012982
Tags
Green Green List (high evidence)
SLC1A4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome MONDO:0014725
Tags
Green Green List (high evidence)
SLC25A13
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • citrin deficiency MONDO:0016602
Tags
Green Green List (high evidence)
SLC25A15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • ornithine translocase deficiency MONDO:0009393 (HHH Syndrome)
Tags
Green Green List (high evidence)
SLC25A22
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Developmental and epileptic encephalopathy MONDO:0100062
Tags
Green Green List (high evidence)
SLC38A8
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome MONDO:0012216
Tags
Green Green List (high evidence)
SLC3A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • cystinuria MONDO:0009067
Tags
Green Green List (high evidence)
SLC6A19
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Hartnup disease MONDO:0009324
Tags
Green Green List (high evidence)
SLC6A8
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • creatine transporter deficiency MONDO:0010305
Tags
Green Green List (high evidence)
SLC7A7
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • lysinuric protein intolerance MONDO:0009109
Tags
Green Green List (high evidence)
SLC7A9
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • cystinuria MONDO:0009067
Tags
Green Green List (high evidence)
SPR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • dopa-responsive dystonia due to sepiapterin reductase deficiency MONDO:0012994
Tags
Green Green List (high evidence)
SUOX
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • isolated sulfite oxidase deficiency MONDO:0010089
Tags
Green Green List (high evidence)
TAT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosinemia type II MONDO:0010160
Tags
Green Green List (high evidence)
TAZ
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria MONDO:0017359
Tags
Green Green List (high evidence)
TH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosine hydroxylase deficiency MONDO:0100064
Tags
Green Green List (high evidence)
TYR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • oculocutaneous albinism type 1 MONDO:0018135
Tags
Green Green List (high evidence)
XPNPEP3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Nephronophthisis-like nephropathy 1 MONDO:0013163
Tags
Amber Amber List (moderate evidence)
GSR
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Hemolytic anemia due to glutathione reductase deficiency MONDO:0019531
  • Disorders of glutathione metabolism
Tags
Amber Amber List (moderate evidence)
PPM1K
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Maple syrup urine disease, mild variant MONDO:0014057
Tags
Amber Amber List (moderate evidence)
SLC1A1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • dicarboxylic aminoaciduria MONDO:0009110
Tags
Amber Amber List (moderate evidence)
SLC6A6
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • hypotaurinemic retinal degeneration and cardiomyopathy MONDO:0007777
Tags
Amber Amber List (moderate evidence)
SUGCT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • glutaric acidemia type 3 MONDO:0009283
Tags
Amber Amber List (moderate evidence)
UROC1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • urocanic aciduria MONDO:0010167
Tags
Red Red List (low evidence)
DMGDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • dimethylglycine dehydrogenase deficiency MONDO:0011610
Tags
Red Red List (low evidence)
GNMT
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • glycine N-methyltransferase deficiency MONDO:0011698
Tags
Red Red List (low evidence)
GSTZ1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • maleylacetoacetate isomerase deficiency MONDO:0060527
Tags
Red Red List (low evidence)
HAL
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • histidinemia MONDO:0009345
Tags
Red Red List (low evidence)
HIBADH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • 3-hydroxyisobutyric aciduria MONDO:0009371
Tags
Red Red List (low evidence)
HYKK
1 review
1 red
Unknown
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • inborn disorder of lysine and hydroxylysine metabolism MONDO:0017351
Tags
Red Red List (low evidence)
KMO
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • pellagra MONDO:0019975
Tags
Red Red List (low evidence)
MPST
1 review
1 red
Unknown
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • encephalopathy due to beta-mercaptolactate-cysteine disulfiduria MONDO:0009585
Tags
Red Red List (low evidence)
NAT8L
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • N-acetylaspartate deficiency MONDO:0013549
Tags
Red Red List (low evidence)
OPLAH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Other
Phenotypes
  • 5-oxoprolinase deficiency MONDO:0009825
  • Disorders of glutathione metabolism
Tags
Red Red List (low evidence)
PHYKPL
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • phosphohydroxylysinuria MONDO:0014008
Tags
Red Red List (low evidence)
PRODH2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • hydroxyprolinemia MONDO:0009374
Tags
Red Red List (low evidence)
SARDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • sarcosinemia MONDO:0010008
Tags
Red Red List (low evidence)
SLC36A2
1 review
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • iminoglycinuria MONDO:0009448
Tags
Red Red List (low evidence)
SLC6A20
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Other
Phenotypes
  • Hyperglycinuria MONDO:0007677
Tags
Red Red List (low evidence)
SLC7A5
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Other
Phenotypes
  • Large neutral amino acid transporter deficiency (MIM#600182)
Tags
Red Red List (low evidence)
TDO2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • familial hypertryptophanemia MONDO:0010907
Tags

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