Description
This panel was developed and is maintained by VCGS and contains genes associated with syndromic and non-syndromic congenital diaphragmatic hernia.

Note pathogenic variants in a broad range of genes have been ascertained in CDH cohorts (e.g. PMID 33461977), so a broader testing approach is recommended particularly in the perinatal period.

6 reviewers

  • Andrew Fennell (Monash Genetics)

  • Lauren Rogers (Victorian Clinical Genetics Services)

  • Elena Savva (Victorian Clinical Genetics Services)

  • Bryony Thompson (Royal Melbourne Hospital)

  • Seb Lunke (Victorian Clinical Genetics Services)

  • Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

48 Entities

48 reviewed, 25 green

List Entity Reviews Mode of inheritance Details
48 Entitiess
Green Green List (high evidence)
ABL1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Congenital heart defects and skeletal malformations syndrome, MIM# 617602
Tags
Green Green List (high evidence)
EFEMP2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Cutis laxa, autosomal recessive, type IB, MIM# 614437
Tags
Green Green List (high evidence)
EFNB1
2 reviews
1 green
Other
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Craniofrontonasal dysplasia, MIM# 304110
  • Diaphragmatic hernia
Tags
Green Green List (high evidence)
FBN1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Marfan syndrome, MIM# 154700
Tags
Green Green List (high evidence)
GATA6
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Pancreatic agenesis and congenital heart defects, MIM# 600001
Tags
Green Green List (high evidence)
GPC3
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Simpson-Golabi-Behmel syndrome, type 1, MIM# 312870
Tags
Green Green List (high evidence)
HCCS
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Linear skin defects with multiple congenital anomalies 1, MIM# 309801
Tags
Green Green List (high evidence)
KMT2D
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Kabuki syndrome 1, MIM# 147920
Tags
Green Green List (high evidence)
LRP2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Donnai-Barrow syndrome, MIM# 222448
Tags
Green Green List (high evidence)
MYRF
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Cardiac-urogenital syndrome, MIM# 618280
Tags
Green Green List (high evidence)
NIPBL
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 1, MIM# 122470
Tags
Green Green List (high evidence)
NR2F2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Congenital heart defects, multiple types, 4, MIM# 615779
Tags
Green Green List (high evidence)
PBX1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review
  • Expert Review Green
Phenotypes
  • Congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay, MIM# 617641
Tags
Green Green List (high evidence)
PIGN
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Multiple congenital anomalies-hypotonia-seizures syndrome 1, 614080
Tags
  • founder
  • SV/CNV
Green Green List (high evidence)
PLS3
2 reviews
2 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Diaphragmatic hernia 5, X-linked, MIM# 306950
Tags
Green Green List (high evidence)
PORCN
1 review
1 green
Other
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Focal dermal hypoplasia, MIM# 305600
Tags
Green Green List (high evidence)
RAD21
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 4, MIM# 614701
Tags
Green Green List (high evidence)
RARB
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Microphthalmia, syndromic 12, MIM# 615524
Tags
Green Green List (high evidence)
RLIM
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Tonne-Kalscheuer syndrome, MIM# 300978
Tags
Green Green List (high evidence)
SETD5
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Intellectual developmental disorder, autosomal dominant 23 MIM#615761
Tags
Green Green List (high evidence)
SPECC1L
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Opitz GBBB syndrome, type II, MIM# 145410
Tags
Green Green List (high evidence)
STRA6
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Microphthalmia, syndromic 9, MIM# 601186
Tags
Green Green List (high evidence)
WNT7B
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Pulmonary hypoplasia, Diaphragmatic anomalies, Anophthalmia/microphthalmia and Cardiac defects syndrome
  • Multiple congenital anomalies/dysmorphic features syndrome MONDO:0043005, WNT7B-related
Tags
Green Green List (high evidence)
WT1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Denys-Drash syndrome, MIM# 194080
Tags
Green Green List (high evidence)
ZFPM2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Diaphragmatic hernia 3, MIM# 610187
Tags
Amber Amber List (moderate evidence)
ALG12
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Congenital disorder of glycosylation, type Ig, MIM# 607143
Tags
Amber Amber List (moderate evidence)
CHD7
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • CHARGE syndrome, MIM# 214800
Tags
Amber Amber List (moderate evidence)
FOXP4
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Neurodevelopmental disorder
  • multiple congenital abnormalities
Tags
Amber Amber List (moderate evidence)
FREM1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Congenital diaphragmatic hernia
Tags
Amber Amber List (moderate evidence)
KDM6A
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Kabuki syndrome 2, MIM# 300867
Tags
Amber Amber List (moderate evidence)
OFD1
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Simpson-Golabi-Behmel syndrome, type 2, MIM# 300209
Tags
Amber Amber List (moderate evidence)
SLIT3
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Congenital diaphragmatic hernia
Tags
Amber Amber List (moderate evidence)
SMC1A
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 2, MIM# 300590
Tags
Amber Amber List (moderate evidence)
SMC3
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 3, MIM# 610759
Tags
Red Red List (low evidence)
ANKRD11
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • KBG syndrome, MIM# 148050
Tags
Red Red List (low evidence)
BRCA2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Fanconi anemia, complementation group D1, MIM# 605724
Tags
Red Red List (low evidence)
CDKN1C
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Beckwith-Wiedemann syndrome, MIM# 130650
Tags
Red Red List (low evidence)
DLL3
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Spondylocostal dysostosis 1, autosomal recessive, MIM# 277300
Tags
Red Red List (low evidence)
FOXC2
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Lymphedema-distichiasis syndrome, MIM# 153400
Tags
Red Red List (low evidence)
FOXP1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Mental retardation with language impairment and with or without autistic features, MIM# 613670
Tags
Red Red List (low evidence)
HDAC8
1 review
1 red
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 5, MIM# 300882
Tags
Red Red List (low evidence)
LONP1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Congenital diaphragmatic hernia
Tags
Red Red List (low evidence)
MCPH1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Microcephaly 1, primary, autosomal recessive, MIM# 251200
Tags
Red Red List (low evidence)
NSD1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Sotos syndrome 1, MIM# 117550
Tags
Red Red List (low evidence)
PDHA1
1 review
1 red
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Pyruvate dehydrogenase E1-alpha deficiency, MIM# 312170
Tags
Red Red List (low evidence)
RASA1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Capillary malformation-arteriovenous malformation 1, MIM# 608354
Tags
Red Red List (low evidence)
SMARCA4
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Coffin-Siris syndrome 4, MIM# 614609
Tags
Red Red List (low evidence)
TRRAP
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Red
Phenotypes
  • Developmental delay with or without dysmorphic facies and autism, MIM# 618454
Tags

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