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Cataract v0.270 FAR1 Chirag Patel gene: FAR1 was added
gene: FAR1 was added to Cataract. Sources: Literature
Mode of inheritance for gene: FAR1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: FAR1 were set to PMID: 33239752
Phenotypes for gene: FAR1 were set to spastic paraparesis and bilateral cataracts
Review for gene: FAR1 was set to GREEN
Added comment: 12 patients with paediatric onset spastic paraparesis and bilateral congenital/juvenile cataracts. Most also had speech and gross motor developmental delay and truncal hypotonia. Exome sequencing identified de novo variants affecting the Arg480 residue in FAR1 (p.Arg480Cys/His/Leu). Further functional studies in fibroblasts showed that these variants cause a disruption of the plasmalogen-dependent feedback regulation of FAR1 protein levels leading to uncontrolled ether lipid production.
Sources: Literature
Cataract v0.244 DPAGT1 Zornitza Stark gene: DPAGT1 was added
gene: DPAGT1 was added to Cataract. Sources: Expert Review
Mode of inheritance for gene: DPAGT1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DPAGT1 were set to 12872255; 22492991; 22304930; 31153949; 30653653; 30117111
Phenotypes for gene: DPAGT1 were set to Congenital disorder of glycosylation, type Ij, MIM# 608093; DPAGT1-CDG MONDO:0011964
Review for gene: DPAGT1 was set to GREEN
Added comment: Cataracts reported in more than 3 unrelated families with this Type I CDG. Other common findings are pronounced muscular hypotonia, intractable epilepsy, global developmental delay/intellectual disability, and early death. Additional features that may be observed include apnoea and respiratory deficiency, joint contractures, vermian hypoplasia, dysmorphic features (esotropia, arched palate, micrognathia, finger clinodactyly, single flexion creases) and feeding difficulties. Overall, more than 20 unrelated families reported.
Sources: Expert Review
Cataract v0.182 NACC1 Zornitza Stark Phenotypes for gene: NACC1 were changed from to Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination delayed brain myelination (MIM# 617393)
Cataract v0.179 NACC1 Ain Roesley reviewed gene: NACC1: Rating: GREEN; Mode of pathogenicity: None; Publications: 28132692; Phenotypes: Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination delayed brain myelination (MIM# 617393); Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Cataract v0.42 EED Zornitza Stark Marked gene: EED as ready
Cataract v0.42 EED Zornitza Stark Added comment: Comment when marking as ready: Single individual reported, unclear at present whether this a feature of the phenotype or a coincidence.
Cataract v0.42 EED Zornitza Stark Gene: eed has been classified as Red List (Low Evidence).
Cataract v0.42 EED Zornitza Stark Classified gene: EED as Red List (low evidence)
Cataract v0.42 EED Zornitza Stark Gene: eed has been classified as Red List (Low Evidence).
Cataract v0.33 EED Lauren Akesson gene: EED was added
gene: EED was added to Cataract. Sources: Literature
Mode of inheritance for gene: EED was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: EED were set to 25787343
Phenotypes for gene: EED were set to Cohen-Gibson syndrome
Penetrance for gene: EED were set to unknown
Review for gene: EED was set to AMBER
Added comment: Cataract has been reported in a single proband with a heterozygous missense variant in EED (no functional studies performed) (PMID 25787343). Cataracts have not been reported in subsequent probands (PMID 27193220 ; 27868325 ; 28229514 ; 29410511 ; 30858506).
Sources: Literature